☰ Navigation Tabs
Thioacylenzyme Intermediate of GAPN from S. Mutans, New Data Integration and Refinement.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ESD PDB ENTRY 2ESD
Crystallization Crystal Properties Matthews coefficient Solvent content 3.05 59.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.47 α = 90 b = 155.21 β = 90 c = 113.08 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2002-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.98040 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 19.78 99.7 0.087 17.4 7.1 124421 3 36.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.33 99.5 0.393 3.9 4.8 17938
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2ESD 2.19 19.78 124377 12452 96.52 0.1889 0.1843 0.1873 0.2299 0.2319 RANDOM 32.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.85464586 -7.58909516 2.7344493
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 19.807 t_it 1.291 t_angle_deg 1.285 t_nbd 0.071 t_gen_planes 0.018 t_bond_d 0.011 t_trig_c_planes 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14368 Nucleic Acid Atoms Solvent Atoms 1384 Heterogen Atoms 232
Software Software Software Name Purpose BUSTER-TNT refinement MAR345dtb data collection XDS data reduction SCALA data scaling MOLREP phasing