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Crystal structure of a putative oxidoreductase (exig_1997) from exiguobacterium sibiricum 255-15 at 1.59 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 0.17M Sodium acetate, 25.5% PEG 4000, 15.0% Glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.52 51.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.314 α = 90 b = 56.314 β = 90 c = 95.205 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-06-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97908 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 26.997 100 0.067 0.067 5.9 7.1 24172 24.182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.63 100 0.832 0.832 0.9 6.7 1753
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.59 26.997 24135 1232 99.96 0.206 0.203 0.2054 0.252 0.2529 RANDOM 19.654
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.13 0.27 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.651 r_dihedral_angle_4_deg 20.551 r_dihedral_angle_3_deg 15.594 r_dihedral_angle_1_deg 6.149 r_scangle_it 3.598 r_scbond_it 2.546 r_mcangle_it 1.836 r_angle_refined_deg 1.654 r_mcbond_it 1.294 r_angle_other_deg 0.961
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.651 r_dihedral_angle_4_deg 20.551 r_dihedral_angle_3_deg 15.594 r_dihedral_angle_1_deg 6.149 r_scangle_it 3.598 r_scbond_it 2.546 r_mcangle_it 1.836 r_angle_refined_deg 1.654 r_mcbond_it 1.294 r_angle_other_deg 0.961 r_mcbond_other 0.315 r_symmetry_vdw_other 0.272 r_symmetry_vdw_refined 0.258 r_nbd_refined 0.245 r_nbd_other 0.204 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.172 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.111 r_nbtor_other 0.091 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1160 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing