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Crystal structure of N-formylglutamate amidohydrolase (YP_297560.1) from Ralstonia eutropha JMP134 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 NANODROP, 30.0% PEG 6000, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.42 49.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.61 α = 90 b = 74.835 β = 90 c = 145.163 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-05-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97944, 0.97917 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.604 99.9 0.078 0.078 6.9 3.5 43945 26.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.9 0.382 0.382 2 3.4 3200
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.604 43897 2213 99.85 0.202 0.199 0.2035 0.246 0.2477 RANDOM 16.522
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.4 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.635 r_dihedral_angle_4_deg 18.106 r_dihedral_angle_3_deg 14.561 r_scangle_it 6.344 r_dihedral_angle_1_deg 6.033 r_scbond_it 4.811 r_mcangle_it 2.817 r_mcbond_it 2.128 r_angle_refined_deg 1.604 r_angle_other_deg 1.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.635 r_dihedral_angle_4_deg 18.106 r_dihedral_angle_3_deg 14.561 r_scangle_it 6.344 r_dihedral_angle_1_deg 6.033 r_scbond_it 4.811 r_mcangle_it 2.817 r_mcbond_it 2.128 r_angle_refined_deg 1.604 r_angle_other_deg 1.019 r_mcbond_other 0.67 r_symmetry_vdw_other 0.299 r_nbd_refined 0.209 r_nbd_other 0.208 r_symmetry_hbond_refined 0.202 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.101 r_chiral_restr 0.1 r_nbtor_other 0.086 r_metal_ion_refined 0.078 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4350 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHARP phasing