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Mycobacterium tuberculosis SuhB
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IMA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.8 56.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.4 α = 90 b = 185.6 β = 90 c = 107.3 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 98.7 0.068 0.068 24.5 4.9 30931 30931 77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 97.4 0.258 0.258 2.5 3.8 3028
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1IMA 2.6 19.88 27563 27563 1469 93.19 0.22372 0.22372 0.22261 0.2169 0.24471 0.2535 RANDOM 57.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.24 -1.86 3.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.632 r_dihedral_angle_4_deg 19.747 r_dihedral_angle_3_deg 17.741 r_dihedral_angle_1_deg 4.686 r_scangle_it 2.799 r_scbond_it 1.645 r_mcangle_it 1.318 r_angle_refined_deg 1.259 r_angle_other_deg 0.936 r_mcbond_it 0.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.632 r_dihedral_angle_4_deg 19.747 r_dihedral_angle_3_deg 17.741 r_dihedral_angle_1_deg 4.686 r_scangle_it 2.799 r_scbond_it 1.645 r_mcangle_it 1.318 r_angle_refined_deg 1.259 r_angle_other_deg 0.936 r_mcbond_it 0.777 r_symmetry_vdw_refined 0.347 r_symmetry_vdw_other 0.34 r_nbd_refined 0.227 r_nbd_other 0.215 r_symmetry_hbond_refined 0.185 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.169 r_mcbond_other 0.131 r_nbtor_other 0.09 r_chiral_restr 0.074 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5342 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling AMoRE phasing