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Ensemble refinement of the crystal structure of protein from Arabidopsis thaliana At5g01750
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZXU PDB entry 1ZXU
Crystallization Crystal Properties Matthews coefficient Solvent content 1.8 31.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.066 α = 90 b = 57.499 β = 90 c = 75.359 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Re-refinement using ensemble model THROUGHOUT PDB entry 1ZXU 1.7 37.68 20236 1036 99.7 0.158 0.158 0.173 0.207 0.2215 RANDOM 21.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.53 -0.47
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26 c_scangle_it 4.18 c_mcangle_it 2.89 c_scbond_it 2.79 c_angle_deg 2 c_mcbond_it 1.9 c_improper_angle_d 1.28 c_bond_d 0.021
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1287 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 4
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction CNS phasing