☰ Navigation Tabs
Actin Dimer Cross-linked Between Residues 41 and 374 and proteolytically cleaved by subtilisin between residues 47 and 48.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q1N pdb entry 2Q1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 30% MPD, 0.1 M sodium acetate, 0.01M calcium chloride, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.46 50.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.253 α = 90 b = 71.984 β = 104.68 c = 54.703 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.00 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 90 87.5 0.176 5.7 2.8 19970 19970 -3 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 55.8 0.418 2.1 1262
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION difference Fourier THROUGHOUT pdb entry 2Q1N 2.7 43.07 3 19970 15349 764 68.09 0.251 0.249 0.2494 0.288 0.2888 RANDOM 24.744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.44 -1.53 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.439 r_dihedral_angle_4_deg 14.838 r_dihedral_angle_3_deg 10.657 r_dihedral_angle_1_deg 3.213 r_angle_refined_deg 1.035 r_scangle_it 0.806 r_mcangle_it 0.797 r_angle_other_deg 0.796 r_mcbond_it 0.555 r_scbond_it 0.534
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.439 r_dihedral_angle_4_deg 14.838 r_dihedral_angle_3_deg 10.657 r_dihedral_angle_1_deg 3.213 r_angle_refined_deg 1.035 r_scangle_it 0.806 r_mcangle_it 0.797 r_angle_other_deg 0.796 r_mcbond_it 0.555 r_scbond_it 0.534 r_symmetry_vdw_other 0.243 r_nbd_refined 0.193 r_mcbond_other 0.186 r_symmetry_vdw_refined 0.184 r_nbd_other 0.173 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.153 r_metal_ion_refined 0.099 r_nbtor_other 0.081 r_symmetry_hbond_refined 0.061 r_chiral_restr 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5245 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 122
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction BOS data collection