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Tricarbonylmanganese(I)-lysozyme complex : a structurally characterized organometallic protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 293 0.9 M NaCl, 50 mM sodium acetate, pH 4.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.542 α = 90 b = 79.542 β = 90 c = 36.392 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD 2006-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.979731 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 89.1 0.035 20.61 3.75 11852 11852
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 15 10683 1160 89.43 0.20987 0.20568 0.2072 0.24945 0.2497 RANDOM 23.808
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.48 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.753 r_dihedral_angle_4_deg 20.738 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 5.276 r_scangle_it 1.897 r_mcangle_it 1.314 r_scbond_it 1.254 r_angle_refined_deg 1.006 r_mcbond_it 0.731 r_symmetry_vdw_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.753 r_dihedral_angle_4_deg 20.738 r_dihedral_angle_3_deg 11.996 r_dihedral_angle_1_deg 5.276 r_scangle_it 1.897 r_mcangle_it 1.314 r_scbond_it 1.254 r_angle_refined_deg 1.006 r_mcbond_it 0.731 r_symmetry_vdw_refined 0.317 r_nbtor_refined 0.309 r_xyhbond_nbd_refined 0.283 r_nbd_refined 0.278 r_symmetry_hbond_refined 0.254 r_metal_ion_refined 0.079 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1006 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection XDS data reduction XDS data scaling XSCALE data scaling