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Crystal structure of tryptophan halogenase (YP_750003.1) from Shewanella frigidimarina NCIMB 400 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 277 NANODROP, 0.2M Na Tartrate, 20.0% PEG 3350, No Buffer pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.7 54.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.545 α = 90 b = 109.613 β = 90 c = 120.036 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97916, 0.97885 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.775 89.9 0.064 0.064 6.7 3.3 184436 14.91
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 50.8 0.313 0.313 2 2.1 7554
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.775 184358 9258 89.84 0.153 0.151 0.1521 0.181 0.1822 RANDOM 14.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 0.33 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.335 r_dihedral_angle_4_deg 12.078 r_dihedral_angle_3_deg 11.028 r_scangle_it 5.659 r_dihedral_angle_1_deg 5.549 r_scbond_it 3.803 r_mcangle_it 2.53 r_mcbond_it 1.709 r_angle_refined_deg 1.443 r_angle_other_deg 0.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.335 r_dihedral_angle_4_deg 12.078 r_dihedral_angle_3_deg 11.028 r_scangle_it 5.659 r_dihedral_angle_1_deg 5.549 r_scbond_it 3.803 r_mcangle_it 2.53 r_mcbond_it 1.709 r_angle_refined_deg 1.443 r_angle_other_deg 0.833 r_mcbond_other 0.43 r_symmetry_vdw_refined 0.299 r_symmetry_vdw_other 0.275 r_nbd_refined 0.216 r_nbd_other 0.178 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.092 r_nbtor_other 0.083 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8214 Nucleic Acid Atoms Solvent Atoms 1587 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing