X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.129860% sat. Ammonium sulfate, 0.1 M HEPES., pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.9537.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 28.472α = 90
b = 52.891β = 90
c = 63.872γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-07-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97948APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.355099.730.05142.87.7218802182414.931
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.351.3851000.37577.72159

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DZO, residues 25-127, backbone atoms only.1.35252182421824110399.730.1720.1720.1710.197RANDOM14.934
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.94-0.8-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.861
r_dihedral_angle_4_deg24.324
r_dihedral_angle_3_deg12.224
r_dihedral_angle_1_deg5.867
r_scangle_it3.47
r_scbond_it2.217
r_angle_refined_deg1.561
r_mcangle_it1.428
r_mcbond_it0.969
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.861
r_dihedral_angle_4_deg24.324
r_dihedral_angle_3_deg12.224
r_dihedral_angle_1_deg5.867
r_scangle_it3.47
r_scbond_it2.217
r_angle_refined_deg1.561
r_mcangle_it1.428
r_mcbond_it0.969
r_nbtor_refined0.306
r_nbd_refined0.233
r_symmetry_vdw_refined0.217
r_xyhbond_nbd_refined0.158
r_symmetry_hbond_refined0.135
r_chiral_restr0.103
r_bond_refined_d0.015
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms948
Nucleic Acid Atoms
Solvent Atoms229
Heterogen Atoms15

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data collection
HKL-2000data reduction