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Crystal Structure of HIV-1 CA146 A92E real cell
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 294 24% PEG 4500, 0.60 M MgCl2, and 100 mM Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.91 35.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.21 α = 71.51 b = 58.931 β = 88.12 c = 92.328 γ = 83.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1000 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96.5 0.059 12.7 3.9 74967 72343 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 95.4 0.124 2 3.8 7121
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 32.21 2 74967 72334 3669 96.32 0.208 0.204 0.206 0.27 0.2663 RANDOM 18.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -0.2 -0.16 -0.08 0.17 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.258 r_dihedral_angle_4_deg 18.062 r_dihedral_angle_3_deg 15.781 r_sphericity_free 8.207 r_dihedral_angle_1_deg 6.229 r_scangle_it 5.412 r_sphericity_bonded 4.13 r_scbond_it 3.596 r_mcangle_it 2.408 r_rigid_bond_restr 2.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.258 r_dihedral_angle_4_deg 18.062 r_dihedral_angle_3_deg 15.781 r_sphericity_free 8.207 r_dihedral_angle_1_deg 6.229 r_scangle_it 5.412 r_sphericity_bonded 4.13 r_scbond_it 3.596 r_mcangle_it 2.408 r_rigid_bond_restr 2.338 r_mcbond_it 1.739 r_angle_refined_deg 1.724 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.225 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9150 Nucleic Acid Atoms Solvent Atoms 797 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection PHASER phasing