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CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3069 FAMILY (SAMA_2622) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.95 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 NANODROP, 2.4M (NH4)2SO4, 0.1M Bicine pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.53 51.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.957 α = 90 b = 47.283 β = 90 c = 98.695 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97936, 0.97922 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 29.062 99.9 0.069 0.069 6.7 3.9 12889 35.56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 100 0.604 0.604 1.3 4 942
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 29.062 12845 627 99.9 0.208 0.208 0.205 0.2045 0.25 0.2387 RANDOM 33.368
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 -0.18 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.727 r_dihedral_angle_3_deg 15.178 r_dihedral_angle_4_deg 12.233 r_scangle_it 7.654 r_scbond_it 5.572 r_dihedral_angle_1_deg 4.934 r_mcangle_it 3.475 r_mcbond_it 2.21 r_angle_refined_deg 1.351 r_angle_other_deg 1.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.727 r_dihedral_angle_3_deg 15.178 r_dihedral_angle_4_deg 12.233 r_scangle_it 7.654 r_scbond_it 5.572 r_dihedral_angle_1_deg 4.934 r_mcangle_it 3.475 r_mcbond_it 2.21 r_angle_refined_deg 1.351 r_angle_other_deg 1.007 r_mcbond_other 0.547 r_symmetry_vdw_other 0.225 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.2 r_nbd_other 0.182 r_nbtor_refined 0.179 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.098 r_nbtor_other 0.09 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1106 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 12
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing SHARP phasing