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Mu2 adaptin subunit (AP50) of AP2 adaptor (second domain), complexed with GABAA receptor-gamma2 subunit-derived internalization peptide DEEYGYECL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BW8 PDB ENTRY 1BW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 291 2.0 M sodium formate, 0.1 M Na-acetate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.86 74.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.3 α = 90 b = 126.3 β = 90 c = 74.65 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2006-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 96.6 0.064 20.14 5.3 22817 -3 66.389
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.75 68.9 0.659 1 2.1 3053
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BW8 2.51 9.97 22817 913 100 0.204 0.203 0.24 0.2463 RANDOM 52.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.98 -0.49 -0.98 1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.858 r_dihedral_angle_3_deg 20.169 r_dihedral_angle_4_deg 18.513 r_dihedral_angle_1_deg 9.433 r_scangle_it 5.373 r_scbond_it 3.617 r_angle_refined_deg 2.641 r_mcangle_it 2.264 r_mcbond_it 1.422 r_symmetry_hbond_refined 0.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.858 r_dihedral_angle_3_deg 20.169 r_dihedral_angle_4_deg 18.513 r_dihedral_angle_1_deg 9.433 r_scangle_it 5.373 r_scbond_it 3.617 r_angle_refined_deg 2.641 r_mcangle_it 2.264 r_mcbond_it 1.422 r_symmetry_hbond_refined 0.347 r_nbtor_refined 0.326 r_nbd_refined 0.241 r_chiral_restr 0.193 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.124 r_bond_refined_d 0.036 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2115 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction