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Crystal structure of uncharacterized protein (NP_599989.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 1.44 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 NANODROP, 10.0% 2-propanol, 0.3M Calcium acetate, 0.1M MES pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.149 α = 100.72 b = 45.153 β = 103.86 c = 60.777 γ = 103.31
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-04-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91162, 0.97929 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 39.193 77.4 0.036 14.96 40271 25.909
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.49 27.2 0.467 2.2 1355
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.44 39.193 40270 2034 78.61 0.17 0.17 0.168 0.199 0.229 RANDOM 18.534
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 0.56 -0.36 1.94 -0.04 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.101 r_dihedral_angle_4_deg 16.797 r_dihedral_angle_3_deg 12.745 r_scangle_it 6.738 r_dihedral_angle_1_deg 4.871 r_scbond_it 4.781 r_mcangle_it 2.694 r_mcbond_it 1.966 r_angle_refined_deg 1.543 r_angle_other_deg 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.101 r_dihedral_angle_4_deg 16.797 r_dihedral_angle_3_deg 12.745 r_scangle_it 6.738 r_dihedral_angle_1_deg 4.871 r_scbond_it 4.781 r_mcangle_it 2.694 r_mcbond_it 1.966 r_angle_refined_deg 1.543 r_angle_other_deg 0.96 r_mcbond_other 0.529 r_symmetry_vdw_other 0.301 r_symmetry_hbond_refined 0.234 r_nbd_refined 0.214 r_nbd_other 0.205 r_xyhbond_nbd_refined 0.197 r_nbtor_refined 0.175 r_symmetry_vdw_refined 0.124 r_metal_ion_refined 0.107 r_nbtor_other 0.086 r_chiral_restr 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2022 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 14
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing