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Crystal Structure of the Ankyrin Repeat Domain of Trpv1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 3% PEG 8000, 0.1M SODIUM CITRATE, 5MM ATP, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, pH 5.00
Crystal Properties Matthews coefficient Solvent content 3.34 63.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.469 α = 90 b = 99.469 β = 90 c = 106.729 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2006-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 100 0.107 24.9 4.5 13575 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.7 0.56 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 20 9618 488 93.7 0.202 0.199 0.2069 0.248 0.2153 RANDOM 37.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.84 1.42 2.84 -4.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.913 r_dihedral_angle_3_deg 21.463 r_dihedral_angle_4_deg 16.581 r_dihedral_angle_1_deg 7.12 r_scangle_it 1.787 r_angle_refined_deg 1.718 r_scbond_it 1.095 r_mcangle_it 0.709 r_mcbond_it 0.391 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.913 r_dihedral_angle_3_deg 21.463 r_dihedral_angle_4_deg 16.581 r_dihedral_angle_1_deg 7.12 r_scangle_it 1.787 r_angle_refined_deg 1.718 r_scbond_it 1.095 r_mcangle_it 0.709 r_mcbond_it 0.391 r_nbtor_refined 0.317 r_symmetry_hbond_refined 0.277 r_nbd_refined 0.245 r_symmetry_vdw_refined 0.243 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.108 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1932 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 31
Software Software Software Name Purpose MOLREP phasing REFMAC refinement CrystalClear data collection CrystalClear data reduction HKL-2000 data scaling