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Crystal structure of haloacid delahogenase-like family hydrolase (NP_639141.1) from Xanthomonas campestris at 1.81 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 NANODROP, 0.2M MgCl2, 20.0% PEG 8000, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.99 38.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.16 α = 90 b = 107.1 β = 102.29 c = 62.56 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97936 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 29.386 82.4 0.056 7.74 37341 29.733
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.87 45.9 0.35 1.6 3378
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.81 29.386 37314 1871 93.3 0.181 0.181 0.178 0.229 0.2189 RANDOM 22.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.14 0.91 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.071 r_dihedral_angle_4_deg 16.283 r_dihedral_angle_3_deg 15.045 r_scangle_it 8.141 r_dihedral_angle_1_deg 6.484 r_scbond_it 5.44 r_mcangle_it 3.287 r_mcbond_it 2.234 r_angle_refined_deg 1.596 r_angle_other_deg 0.994
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.071 r_dihedral_angle_4_deg 16.283 r_dihedral_angle_3_deg 15.045 r_scangle_it 8.141 r_dihedral_angle_1_deg 6.484 r_scbond_it 5.44 r_mcangle_it 3.287 r_mcbond_it 2.234 r_angle_refined_deg 1.596 r_angle_other_deg 0.994 r_mcbond_other 0.628 r_symmetry_vdw_other 0.289 r_symmetry_vdw_refined 0.278 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.216 r_nbd_other 0.202 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.094 r_nbtor_other 0.087 r_metal_ion_refined 0.029 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3524 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 12
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing SHARP phasing