X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3948.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.39α = 90
b = 151.85β = 90
c = 80.24γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113IMAGE PLATERIGAKU RAXIS IVOsmic2006-05-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3919.5960.07511.54.4312774
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.392.4895.60.2733.84.431263

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTGTB2.3919.51274663095.830.1720.1680.236RANDOM29.52
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.640.390.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.252
r_dihedral_angle_4_deg18.51
r_dihedral_angle_3_deg16.098
r_dihedral_angle_1_deg6.411
r_scangle_it3.019
r_scbond_it1.876
r_mcangle_it1.384
r_angle_refined_deg1.341
r_mcbond_it0.835
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.252
r_dihedral_angle_4_deg18.51
r_dihedral_angle_3_deg16.098
r_dihedral_angle_1_deg6.411
r_scangle_it3.019
r_scbond_it1.876
r_mcangle_it1.384
r_angle_refined_deg1.341
r_mcbond_it0.835
r_nbtor_refined0.306
r_symmetry_vdw_refined0.215
r_nbd_refined0.193
r_xyhbond_nbd_refined0.139
r_symmetry_hbond_refined0.126
r_chiral_restr0.092
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2221
Nucleic Acid Atoms
Solvent Atoms119
Heterogen Atoms

Software

Software
Software NamePurpose
d*TREKdata scaling
AMoREphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
d*TREKdata reduction
MOLREPphasing