2PFU
NMR structure determination of the periplasmic domain of ExbD from E.coli
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.2mM per-ExbD U-15N, 13C | 100% D2O, pH 3 | 3 | 1 atm | 298 | ||
2 | 3D_15N-separated_NOESY | 0.2mM per-ExbD U-15N | 90% H2O/10% H2O, pH 3 | 3 | 1 atm | 298 | ||
3 | 2D NOESY | 0.2mM per-ExbD | 100% D2O, pH 3 | 3 | 1 atm | 298 | ||
4 | 3D_13C-separated_NOESY | 0.2mM per-ExbD U-15N | 90% H2O/10% H2O, pH 3 | 3 | 1 atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 19 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 2.0 | GUNTERT, P. ET AL. |
2 | structure solution | CYANA | 2.0 | GUNTERT, P. ET AL. |