2PF0

F258I mutant of EXO-B-(1,3)-GLUCANASE FROM CANDIDA ALBICANS at 1.9 A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.3293PEG 8000, Hepes, CaCl2, pH 7.3, temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.0840.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.33α = 90
b = 65.39β = 90
c = 96.49γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATERIGAKU RAXIS II1999-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.932.6598.890.0523077430432

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1EQP1.932.653077430432125698.890.1350.1340.168RANDOM18.389
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.239
r_dihedral_angle_4_deg15.909
r_dihedral_angle_3_deg11.58
r_dihedral_angle_1_deg5.935
r_scangle_it3.703
r_scbond_it2.486
r_mcangle_it1.556
r_angle_refined_deg1.354
r_mcbond_it1.007
r_angle_other_deg0.966
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.239
r_dihedral_angle_4_deg15.909
r_dihedral_angle_3_deg11.58
r_dihedral_angle_1_deg5.935
r_scangle_it3.703
r_scbond_it2.486
r_mcangle_it1.556
r_angle_refined_deg1.354
r_mcbond_it1.007
r_angle_other_deg0.966
r_symmetry_vdw_other0.249
r_mcbond_other0.243
r_nbd_refined0.222
r_symmetry_hbond_refined0.201
r_nbd_other0.197
r_nbtor_refined0.186
r_xyhbond_nbd_refined0.175
r_symmetry_vdw_refined0.126
r_chiral_restr0.089
r_nbtor_other0.088
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3211
Nucleic Acid Atoms
Solvent Atoms334
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing