☰ Navigation Tabs
Crystal structure of acetyltransferase GNAT family (NP_688560.1) from Streptococcus agalactiae 2603 at 1.28 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.79 293 NANODROP, 1.91M Ammonium sulfate, 0.1M Tris-HCl pH 7.79, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.97 37.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.48 α = 94.22 b = 37.65 β = 109.42 c = 41.5 γ = 113.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2007-03-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97939 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.28 25.959 78.3 0.03 9.99 73297 13.84
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.28 1.33 28.2 0.422 1.62 2499
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.28 25.959 37027 1905 79.3 0.167 0.167 0.167 0.1759 0.178 0.1854 RANDOM 14.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.16 -0.05 0.24 0.34 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.774 r_dihedral_angle_3_deg 11.47 r_dihedral_angle_4_deg 8.368 r_dihedral_angle_1_deg 6.233 r_scangle_it 5.479 r_scbond_it 4.058 r_mcangle_it 2.69 r_mcbond_it 1.892 r_angle_refined_deg 1.439 r_angle_other_deg 0.788
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.774 r_dihedral_angle_3_deg 11.47 r_dihedral_angle_4_deg 8.368 r_dihedral_angle_1_deg 6.233 r_scangle_it 5.479 r_scbond_it 4.058 r_mcangle_it 2.69 r_mcbond_it 1.892 r_angle_refined_deg 1.439 r_angle_other_deg 0.788 r_mcbond_other 0.387 r_symmetry_vdw_refined 0.239 r_symmetry_vdw_other 0.238 r_nbd_refined 0.227 r_nbd_other 0.192 r_nbtor_refined 0.189 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.159 r_nbtor_other 0.085 r_chiral_restr 0.082 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1375 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 16
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection SHELXD phasing SOLVE phasing