☰ Navigation Tabs
Crystal Structure of Dengue Methyltransferase in Complex with 7MeGpppG2'OMe and S-Adenosyl-L-homocysteine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L9K PDB ENTRY 1L9K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 293 0.4 M Ammonium Sulfate, 0.1 M Sodium Citrate, 1.2 M Lithium Sulfate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.75 55.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.394 α = 90 b = 108.394 β = 90 c = 55.89 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.9 99.5 0.034 37.6 6.9 35292 35115 25.71
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 97.3 0.215 6.1 4.2 4976
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1L9K 1.801 36.66 33164 32998 2070 99.5 0.16469 0.16469 0.16271 0.1627 0.19588 0.1931 RANDOM 29.058
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.16 0.32 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.063 r_dihedral_angle_4_deg 16.366 r_dihedral_angle_3_deg 13.467 r_dihedral_angle_1_deg 5.26 r_scangle_it 2.922 r_scbond_it 1.918 r_angle_refined_deg 1.542 r_mcangle_it 1.15 r_mcbond_it 0.797 r_symmetry_hbond_refined 0.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.063 r_dihedral_angle_4_deg 16.366 r_dihedral_angle_3_deg 13.467 r_dihedral_angle_1_deg 5.26 r_scangle_it 2.922 r_scbond_it 1.918 r_angle_refined_deg 1.542 r_mcangle_it 1.15 r_mcbond_it 0.797 r_symmetry_hbond_refined 0.385 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.114 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2026 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 145
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling