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CRYSTAL STRUCTURE OF A PUTATIVE HALOACID DEHALOGENASE-LIKE HYDROLASE (BXE_B1342) FROM BURKHOLDERIA XENOVORANS LB400 AT 2.20 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 25.0% Glycerol, 0.6M KH2PO4, 0.6M NaH2PO4, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.07 40.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.39 α = 90 b = 68.08 β = 112.22 c = 88.24 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-02-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.94642, 0.97925, 0.97902 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.341 94.2 0.035 13.88 22404 47.699
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 76.4 0.29 2.8 3464
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 28.341 22404 1148 99.2 0.203 0.203 0.201 0.2053 0.247 0.2471 RANDOM 13.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.92 3 -2.2 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.443 r_dihedral_angle_4_deg 18.272 r_dihedral_angle_3_deg 16.532 r_dihedral_angle_1_deg 6.198 r_scangle_it 5.971 r_scbond_it 4.513 r_mcangle_it 2.491 r_mcbond_it 1.704 r_angle_refined_deg 1.412 r_angle_other_deg 0.948
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.443 r_dihedral_angle_4_deg 18.272 r_dihedral_angle_3_deg 16.532 r_dihedral_angle_1_deg 6.198 r_scangle_it 5.971 r_scbond_it 4.513 r_mcangle_it 2.491 r_mcbond_it 1.704 r_angle_refined_deg 1.412 r_angle_other_deg 0.948 r_mcbond_other 0.502 r_symmetry_vdw_refined 0.225 r_nbd_refined 0.215 r_symmetry_vdw_other 0.207 r_nbd_other 0.194 r_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.185 r_nbtor_other 0.088 r_chiral_restr 0.08 r_symmetry_hbond_refined 0.046 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3448 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms 32
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing SHARP phasing