X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52981.5 M lithium sulfate, 0.1 M Na Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.4148.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.524α = 90
b = 50.524β = 90
c = 48.148γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2005-06-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26C0.96NSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.355097.70.06714.53.4156571565717.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.496.50.542.963.21513

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 6CRO protein portion1.3543.77156571565778897.770.1340.1320.171RANDOM9.781
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.330.160.33-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.046
r_sphericity_free12.283
r_dihedral_angle_3_deg11.487
r_dihedral_angle_4_deg10.031
r_scangle_it6.999
r_scbond_it5.912
r_sphericity_bonded4.867
r_dihedral_angle_1_deg4.062
r_mcangle_it3.57
r_mcbond_it3.035
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.046
r_sphericity_free12.283
r_dihedral_angle_3_deg11.487
r_dihedral_angle_4_deg10.031
r_scangle_it6.999
r_scbond_it5.912
r_sphericity_bonded4.867
r_dihedral_angle_1_deg4.062
r_mcangle_it3.57
r_mcbond_it3.035
r_rigid_bond_restr2.511
r_angle_refined_deg1.29
r_mcbond_other1.169
r_angle_other_deg0.877
r_nbd_refined0.234
r_nbd_other0.191
r_nbtor_refined0.182
r_symmetry_vdw_other0.175
r_symmetry_hbond_refined0.156
r_xyhbond_nbd_refined0.135
r_symmetry_vdw_refined0.135
r_chiral_restr0.096
r_nbtor_other0.077
r_bond_refined_d0.01
r_bond_other_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms454
Nucleic Acid Atoms
Solvent Atoms108
Heterogen Atoms11

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection