☰ Navigation Tabs
Lambda Cro Q27P/A29S/K32Q triple mutant at 1.35 A in space group P3221
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CRO PDB entry 6CRO protein portion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1.5 M lithium sulfate, 0.1 M Na Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.41 48.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.524 α = 90 b = 50.524 β = 90 c = 48.148 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2005-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.96 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 97.7 0.067 14.5 3.4 15657 15657 17.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 96.5 0.54 2.96 3.2 1513
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 6CRO protein portion 1.35 43.77 15657 15657 788 97.77 0.134 0.132 0.1401 0.171 0.1765 RANDOM 9.781
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.16 0.33 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.046 r_sphericity_free 12.283 r_dihedral_angle_3_deg 11.487 r_dihedral_angle_4_deg 10.031 r_scangle_it 6.999 r_scbond_it 5.912 r_sphericity_bonded 4.867 r_dihedral_angle_1_deg 4.062 r_mcangle_it 3.57 r_mcbond_it 3.035
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.046 r_sphericity_free 12.283 r_dihedral_angle_3_deg 11.487 r_dihedral_angle_4_deg 10.031 r_scangle_it 6.999 r_scbond_it 5.912 r_sphericity_bonded 4.867 r_dihedral_angle_1_deg 4.062 r_mcangle_it 3.57 r_mcbond_it 3.035 r_rigid_bond_restr 2.511 r_angle_refined_deg 1.29 r_mcbond_other 1.169 r_angle_other_deg 0.877 r_nbd_refined 0.234 r_nbd_other 0.191 r_nbtor_refined 0.182 r_symmetry_vdw_other 0.175 r_symmetry_hbond_refined 0.156 r_xyhbond_nbd_refined 0.135 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.096 r_nbtor_other 0.077 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 454 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection