2OV2

The crystal structure of the human RAC3 in complex with the CRIB domain of human p21-activated kinase 4 (PAK4)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.62930.2M Ammonium acetate, 0.1M Citrate, 30% PEG 4000, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4649.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.843α = 88.58
b = 73.859β = 87.76
c = 133.84γ = 70.64
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-09-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.96870SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.162.1199.90.1470.1477.8310611120.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.2199.80.6020.6021.92.944621

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2G0N2.162.11100750100750529298.930.17450.17450.17190.22453RANDOM30.184
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.01-0.42-0.04-0.090.02-1.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.709
r_dihedral_angle_4_deg21.016
r_dihedral_angle_3_deg13.691
r_dihedral_angle_1_deg6.093
r_scangle_it2.138
r_angle_refined_deg1.485
r_scbond_it1.423
r_angle_other_deg0.968
r_mcangle_it0.799
r_mcbond_it0.486
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.709
r_dihedral_angle_4_deg21.016
r_dihedral_angle_3_deg13.691
r_dihedral_angle_1_deg6.093
r_scangle_it2.138
r_angle_refined_deg1.485
r_scbond_it1.423
r_angle_other_deg0.968
r_mcangle_it0.799
r_mcbond_it0.486
r_symmetry_vdw_other0.299
r_nbd_refined0.201
r_nbd_other0.193
r_symmetry_vdw_refined0.185
r_symmetry_hbond_refined0.183
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.149
r_mcbond_other0.14
r_chiral_restr0.086
r_nbtor_other0.086
r_metal_ion_refined0.06
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12994
Nucleic Acid Atoms
Solvent Atoms1132
Heterogen Atoms284

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
MOSFLMdata reduction
CCP4data scaling
PHASERphasing