2OQG

ArsR-like Transcriptional Regulator from Rhodococcus sp. RHA1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52950.1M Sodium acetate pH 4.5, 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.9536.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.872α = 90
b = 57.494β = 96.54
c = 101.103γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-3mirrors2006-12-01MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.9794, 0.9792, 0.9717APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5428.9492.40.0867.98.15277052770
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.541.652.40.3592.433.72979

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.5428.945009550095268192.490.1910.1910.1880.256RANDOM23.861
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.110.230.84-0.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.885
r_dihedral_angle_4_deg18.875
r_dihedral_angle_3_deg16.126
r_sphericity_free6.661
r_sphericity_bonded5.441
r_dihedral_angle_1_deg4.951
r_scangle_it4.854
r_scbond_it3.267
r_mcangle_it2.312
r_rigid_bond_restr1.956
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.885
r_dihedral_angle_4_deg18.875
r_dihedral_angle_3_deg16.126
r_sphericity_free6.661
r_sphericity_bonded5.441
r_dihedral_angle_1_deg4.951
r_scangle_it4.854
r_scbond_it3.267
r_mcangle_it2.312
r_rigid_bond_restr1.956
r_mcbond_it1.57
r_angle_refined_deg1.524
r_nbtor_refined0.304
r_symmetry_vdw_refined0.26
r_nbd_refined0.248
r_symmetry_hbond_refined0.225
r_xyhbond_nbd_refined0.203
r_chiral_restr0.1
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3303
Nucleic Acid Atoms
Solvent Atoms575
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data collection
HKL-3000data reduction
HKL-3000data scaling
SHARPphasing