☰ Navigation Tabs
crystal structure of the UBA domain from Cbl-b ubiquitin ligase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 293 1.2M sodium/potassium phosphate, 12% glycerol, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.138 α = 90 b = 50.199 β = 90 c = 78.343 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 mirrors 2005-08-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 50 97.5 0.071 29.2 5.9 13332 13003 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.62 89.5 0.215 7.4 4.7 883
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.56 17.29 13332 12372 631 97.53 0.206 0.206 0.2043 0.23992 0.2725 RANDOM 16.835
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.99 r_dihedral_angle_4_deg 24.025 r_dihedral_angle_3_deg 11.777 r_dihedral_angle_1_deg 4.993 r_scangle_it 3.074 r_scbond_it 1.846 r_angle_refined_deg 1.26 r_mcangle_it 0.964 r_mcbond_it 0.654 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.99 r_dihedral_angle_4_deg 24.025 r_dihedral_angle_3_deg 11.777 r_dihedral_angle_1_deg 4.993 r_scangle_it 3.074 r_scbond_it 1.846 r_angle_refined_deg 1.26 r_mcangle_it 0.964 r_mcbond_it 0.654 r_nbtor_refined 0.313 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.2 r_symmetry_vdw_refined 0.133 r_xyhbond_nbd_refined 0.089 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 666 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing