X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.129332% PEG400, 4% MPD, and 100mM Imidazole, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0941.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.882α = 90
b = 51.508β = 98.56
c = 65.639γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2005-10-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.650970.04821.53.728159
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6695.60.4752.963.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2G8C1.6202217226475142797.040.220050.217940.25877RANDOM26.658
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.230.471.94-3.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.667
r_dihedral_angle_3_deg14.898
r_dihedral_angle_4_deg12.184
r_dihedral_angle_1_deg5.727
r_scangle_it3.998
r_scbond_it2.782
r_angle_refined_deg1.569
r_mcangle_it1.493
r_mcbond_it1.214
r_angle_other_deg0.764
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.667
r_dihedral_angle_3_deg14.898
r_dihedral_angle_4_deg12.184
r_dihedral_angle_1_deg5.727
r_scangle_it3.998
r_scbond_it2.782
r_angle_refined_deg1.569
r_mcangle_it1.493
r_mcbond_it1.214
r_angle_other_deg0.764
r_mcbond_other0.287
r_symmetry_vdw_other0.275
r_symmetry_hbond_refined0.244
r_nbd_refined0.205
r_nbd_other0.19
r_xyhbond_nbd_refined0.172
r_symmetry_vdw_refined0.169
r_nbtor_refined0.164
r_nbtor_other0.088
r_chiral_restr0.087
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1807
Nucleic Acid Atoms
Solvent Atoms176
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing