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Crystal structure of acetyltransferase GNAT family (YP_013287.1) from Listeria monocytogenes 4b F2365 at 1.46 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 NANODROP, 1.0M Na Citrate, 0.2M NaCl, 0.1M TRIS pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.41 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.624 α = 90 b = 99.833 β = 90 c = 122.878 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT MIRROR (VERTICAL FOCUSING) 2006-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97932, 0.97901 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 46.225 89.6 0.055 12.54 125870 25.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.51 52.5 0.671 1.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.46 46.225 125813 6317 89.66 0.17 0.17 0.168 0.193 0.2262 RANDOM 17.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 0.64 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.138 r_dihedral_angle_4_deg 17.275 r_dihedral_angle_3_deg 12.564 r_scangle_it 6.786 r_dihedral_angle_1_deg 5.709 r_scbond_it 5.209 r_mcangle_it 3.23 r_mcbond_it 2.35 r_angle_refined_deg 1.631 r_angle_other_deg 0.963
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.138 r_dihedral_angle_4_deg 17.275 r_dihedral_angle_3_deg 12.564 r_scangle_it 6.786 r_dihedral_angle_1_deg 5.709 r_scbond_it 5.209 r_mcangle_it 3.23 r_mcbond_it 2.35 r_angle_refined_deg 1.631 r_angle_other_deg 0.963 r_mcbond_other 0.575 r_symmetry_vdw_other 0.298 r_nbd_refined 0.262 r_symmetry_vdw_refined 0.253 r_symmetry_hbond_refined 0.227 r_nbd_other 0.205 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.179 r_chiral_restr 0.097 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5509 Nucleic Acid Atoms Solvent Atoms 838 Heterogen Atoms 52
Software Software Software Name Purpose MolProbity model building REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction