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Restriction Endonuclease BCNI-Cognate DNA Substrate Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 294 0.02 M calcium chloride dihydrate, 0.1 M sodium acetate trihydrate pH 4.6 and 30% (v/v) 2-methyl-2,4-pentanediol, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.05 40.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.553 α = 90 b = 87.87 β = 90 c = 79.391 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MIRROR 2006-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 0.97955 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 97.8 0.05 8.5 3.7 99034 99034 12.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 96.3 0.25 2.9 3.7 14110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 28.38 98979 98979 4977 97.5 0.175 0.175 0.174 0.1766 0.199 0.1995 RANDOM 13.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -0.06 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.596 r_dihedral_angle_4_deg 17.298 r_dihedral_angle_3_deg 11.937 r_dihedral_angle_1_deg 6.359 r_scangle_it 2.222 r_scbond_it 1.628 r_angle_refined_deg 1.192 r_mcangle_it 1.034 r_mcbond_it 0.971 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.596 r_dihedral_angle_4_deg 17.298 r_dihedral_angle_3_deg 11.937 r_dihedral_angle_1_deg 6.359 r_scangle_it 2.222 r_scbond_it 1.628 r_angle_refined_deg 1.192 r_mcangle_it 1.034 r_mcbond_it 0.971 r_nbtor_refined 0.302 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.193 r_symmetry_hbond_refined 0.157 r_metal_ion_refined 0.14 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3844 Nucleic Acid Atoms 890 Solvent Atoms 650 Heterogen Atoms 5
Software Software Software Name Purpose SHELXD phasing SHARP phasing NCSREF model building REFMAC refinement MAR345 data collection MOSFLM data reduction CCP4 data scaling SHELXE model building ARP/wARP model building