☰ Navigation Tabs
Restriction Endonuclease BCNI in the Absence of DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 294 0.17 M ammonium acetate, 0.085 M tri-sodium citrate pH 5.6, 25.5% PEG 4000, 15% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.7 54.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.176 α = 90 b = 68.176 β = 90 c = 127.207 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MIRROR 2006-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 99.2 0.07 4 5.8 40038 40038 26.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.4 0.25 3.1 4.3 5737
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 29.62 39959 39959 2018 99.1 0.204 0.204 0.203 0.2134 0.215 0.2195 RANDOM 19.393
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.32 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.739 r_scangle_it 3.343 r_scbond_it 2.109 r_mcangle_it 1.54 r_angle_refined_deg 1.342 r_mcbond_it 0.859 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.275 r_nbd_other 0.252 r_nbd_refined 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.739 r_scangle_it 3.343 r_scbond_it 2.109 r_mcangle_it 1.54 r_angle_refined_deg 1.342 r_mcbond_it 0.859 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.275 r_nbd_other 0.252 r_nbd_refined 0.213 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.179 r_symmetry_vdw_refined 0.139 r_chiral_restr 0.084 r_nbtor_other 0.081 r_bond_refined_d 0.012 r_gen_planes_other 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1884 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 11
Software Software Software Name Purpose SHELXD phasing SHARP phasing NCSREF model building REFMAC refinement MAR345 data collection MOSFLM data reduction CCP4 data scaling MLPHARE phasing DM phasing ARP/wARP model building