Experiment: 2O9X

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	3.9	294	2.5 M AMMONIUM ACETATE, 0.1 M SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K, pH 3.90

Crystal Properties
Matthews coefficient	Solvent content
4.6	74

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 137.51	α = 90
b = 137.51	β = 90
c = 64.282	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315	SI 111 CHANNEL	2004-10-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	0.9793	APS	19-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.4	50	99.8	0.07	36.95	24.9	5295	5292		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.4	3.52	100		0.507	5.18	26.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	3.4	34.38	5008	5008	254	100	0.239	0.239	0.237	0.285	RANDOM	77.98

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.01	-1		-2.01		3.01

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.232
r_dihedral_angle_3_deg	24.848
r_scangle_it	13.274
r_dihedral_angle_1_deg	10.411
r_scbond_it	9.256
r_dihedral_angle_4_deg	7.1
r_mcangle_it	6.021
r_mcbond_it	3.265
r_angle_refined_deg	2.51
r_nbtor_refined	0.354

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.232
r_dihedral_angle_3_deg	24.848
r_scangle_it	13.274
r_dihedral_angle_1_deg	10.411
r_scbond_it	9.256
r_dihedral_angle_4_deg	7.1
r_mcangle_it	6.021
r_mcbond_it	3.265
r_angle_refined_deg	2.51
r_nbtor_refined	0.354
r_nbd_refined	0.308
r_symmetry_vdw_refined	0.301
r_xyhbond_nbd_refined	0.194
r_symmetry_hbond_refined	0.161
r_chiral_restr	0.154
r_bond_refined_d	0.022
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1130
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
HKL-2000	data scaling
SHELXD	phasing
SHELXE	model building
MLPHARE	phasing
DM	model building
SOLVE	phasing
O	model building
Coot	model building
CCP4	model building
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	phasing
DM	phasing
CCP4	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.