X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.6288100 mM Tris-HCL, 150 mM Sodium Citrate, 20% (w/v) PEG 3350, pH 8.6, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties
Matthews coefficientSolvent content
3.0559.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.267α = 90
b = 103.234β = 90
c = 149.992γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-07-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.55099.50.098.75.452428521660.256
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5995.90.611.94.14949

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2O8A2.548.85242852097262299.360.1970.1970.1940.235RANDOM48.687
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.771.33-2.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.883
r_scangle_it3.167
r_scbond_it1.849
r_mcangle_it1.287
r_angle_refined_deg1.184
r_mcbond_it0.639
r_symmetry_vdw_refined0.206
r_nbd_refined0.19
r_symmetry_hbond_refined0.188
r_xyhbond_nbd_refined0.134
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.883
r_scangle_it3.167
r_scbond_it1.849
r_mcangle_it1.287
r_angle_refined_deg1.184
r_mcbond_it0.639
r_symmetry_vdw_refined0.206
r_nbd_refined0.19
r_symmetry_hbond_refined0.188
r_xyhbond_nbd_refined0.134
r_chiral_restr0.079
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5742
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms2

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction
REFMACphasing