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Crystal structure of the 1E9 LeuH47Trp/ArgH100Trp Fab 5-beta-androstane-3,17-dione complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295 2.0 M ammonium sulfate, 0.15 M sodium citrate, 0.01% PEG 20000, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 4.52 72.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.328 α = 90 b = 127.328 β = 90 c = 91.963 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.05966 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.9 0.085 8.5 14.3 4.3 33879 33845 54.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.9 0.529 52.9 2.7 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION rigid body refinement THROUGHOUT 2.4 50 32190 29534 1562 91.75 0.17374 0.17374 0.17145 0.1701 0.2163 0.2123 RANDOM 47.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.25 1.62 3.25 -4.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.907 r_dihedral_angle_4_deg 19.481 r_dihedral_angle_3_deg 18.282 r_scangle_it 7.753 r_dihedral_angle_1_deg 6.536 r_scbond_it 5.757 r_mcangle_it 3.127 r_mcbond_it 1.795 r_angle_refined_deg 1.574 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.907 r_dihedral_angle_4_deg 19.481 r_dihedral_angle_3_deg 18.282 r_scangle_it 7.753 r_dihedral_angle_1_deg 6.536 r_scbond_it 5.757 r_mcangle_it 3.127 r_mcbond_it 1.795 r_angle_refined_deg 1.574 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3349 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement BOS data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing