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Crystal structure of the 1E9 LeuH47Trp/ArgH100Trp Fab progesterone complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 1.5 M ammonium sulfate, 0.15 M sodium citrate, 0.01% PEG 20000, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 4.59 73.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.354 α = 90 b = 128.354 β = 90 c = 91.816 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.99996 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 50 96.4 0.111 11.1 9.6 3.9 21201 20438 52.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.92 88.3 0.382 38.2 2.4 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION rigid body refinement THROUGHOUT 2.85 50 19683 19177 1034 97.43 0.18607 0.18607 0.18344 0.23586 0.2539 RANDOM 45.127
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.23 1.62 3.23 -4.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.901 r_dihedral_angle_3_deg 20.02 r_dihedral_angle_4_deg 19.889 r_dihedral_angle_1_deg 7.174 r_scangle_it 2.763 r_scbond_it 1.673 r_angle_refined_deg 1.649 r_mcangle_it 1.056 r_mcbond_it 0.555 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.901 r_dihedral_angle_3_deg 20.02 r_dihedral_angle_4_deg 19.889 r_dihedral_angle_1_deg 7.174 r_scangle_it 2.763 r_scbond_it 1.673 r_angle_refined_deg 1.649 r_mcangle_it 1.056 r_mcbond_it 0.555 r_nbtor_refined 0.318 r_nbd_refined 0.222 r_symmetry_hbond_refined 0.189 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3349 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement BOS data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing