2O4V

An arginine ladder in OprP mediates phosphate specific transfer across the outer membrane


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.1M Hepes pH 6.5, 50mM K2HPO4, 5% MPD, 7.5-10% PEG8K, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
4.169.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 255.13α = 90
b = 142.769β = 99.49
c = 62.025γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray105CCDADSC QUANTUM 315mirrors2005-12-05MMAD
21x-ray105CCDADSC QUANTUM 315mirrors2005-12-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.97965, 0.97983, 0.96441ALS8.2.2
2SYNCHROTRONALS BEAMLINE 8.2.2ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.9462.991.10.0670.06714.84.41470211.142.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.9462.9139653736691.080.175280.174310.19397RANDOM19.116
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.33-0.470.162.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.182
r_dihedral_angle_4_deg18.194
r_dihedral_angle_3_deg12.498
r_dihedral_angle_1_deg6.582
r_scangle_it1.971
r_scbond_it1.276
r_angle_refined_deg1.154
r_mcangle_it0.708
r_mcbond_it0.451
r_nbtor_refined0.299
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.182
r_dihedral_angle_4_deg18.194
r_dihedral_angle_3_deg12.498
r_dihedral_angle_1_deg6.582
r_scangle_it1.971
r_scbond_it1.276
r_angle_refined_deg1.154
r_mcangle_it0.708
r_mcbond_it0.451
r_nbtor_refined0.299
r_nbd_refined0.182
r_symmetry_vdw_refined0.168
r_symmetry_hbond_refined0.123
r_xyhbond_nbd_refined0.103
r_chiral_restr0.083
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9600
Nucleic Acid Atoms
Solvent Atoms631
Heterogen Atoms115

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
MOSFLMdata reduction
CCP4data scaling
SHELXSphasing