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Crystal Structure of HIV-1 Protease (TRM Mutant) in Complex with Tipranavir
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.75-2.0 M NaCl, 100 mM acetate or citrate buffer pH 4.8-5.8 , VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.74 55.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.076 α = 90 b = 86.487 β = 90 c = 46.439 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV osmic mirrors 2004-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.6 94.7 0.086 0.086 10.7 3.9 15839
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 84.2 0.308 0.308 3.07 3.1 1379
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 19.6 15710 1587 99.32 0.189 0.185 0.227 RANDOM 25.099
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -1.42 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.596 r_dihedral_angle_4_deg 17.593 r_dihedral_angle_3_deg 13.614 r_dihedral_angle_1_deg 5.79 r_scangle_it 3.358 r_scbond_it 2.312 r_angle_refined_deg 1.602 r_mcangle_it 1.348 r_mcbond_it 0.944 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.596 r_dihedral_angle_4_deg 17.593 r_dihedral_angle_3_deg 13.614 r_dihedral_angle_1_deg 5.79 r_scangle_it 3.358 r_scbond_it 2.312 r_angle_refined_deg 1.602 r_mcangle_it 1.348 r_mcbond_it 0.944 r_nbtor_refined 0.304 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.167 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1520 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms 48
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CNS phasing