X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52914.8 M NH4-Acetate, 0.1 M Na-Acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
4.8374.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.586α = 90
b = 133.586β = 90
c = 160.043γ = 120
Symmetry
Space GroupP 64 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmAu-coated planar; toroidal mirrors2005-10-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW61.05MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.652099.30.07520.541010091002812.826.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.6799.70.4482.833955

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.6519.719582793729501597.810.189590.188590.20796RANDOM23.924
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.410.210.41-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.173
r_dihedral_angle_4_deg18.045
r_dihedral_angle_3_deg12.13
r_scangle_it8.763
r_dihedral_angle_1_deg8.328
r_scbond_it6.366
r_mcangle_it4.469
r_mcbond_it3.216
r_angle_refined_deg1.511
r_mcbond_other1.016
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.173
r_dihedral_angle_4_deg18.045
r_dihedral_angle_3_deg12.13
r_scangle_it8.763
r_dihedral_angle_1_deg8.328
r_scbond_it6.366
r_mcangle_it4.469
r_mcbond_it3.216
r_angle_refined_deg1.511
r_mcbond_other1.016
r_angle_other_deg0.899
r_symmetry_vdw_other0.236
r_symmetry_vdw_refined0.223
r_nbd_refined0.216
r_nbd_other0.196
r_nbtor_refined0.17
r_xyhbond_nbd_refined0.168
r_symmetry_hbond_refined0.135
r_chiral_restr0.089
r_nbtor_other0.084
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2798
Nucleic Acid Atoms
Solvent Atoms536
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
DENZOdata reduction
SCALEPACKdata scaling