☰ Navigation Tabs
Crystal structure of the Bateman2 domain of yeast Snf4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.5 294 30% (w/v) PEG4000 and 200 mM (NH4)Acetate, pH 4.5, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.25 45.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.184 α = 90 b = 64.184 β = 90 c = 61.141 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 2005-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 11833
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 28.4 11241 561 99.71 0.20623 0.20455 0.2042 0.23802 0.2353 RANDOM 27.626
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.06 -0.11 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.328 r_dihedral_angle_4_deg 18.374 r_dihedral_angle_3_deg 14.976 r_dihedral_angle_1_deg 4.881 r_scangle_it 4.032 r_scbond_it 2.675 r_mcangle_it 1.884 r_angle_refined_deg 1.545 r_mcbond_it 1.244 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.328 r_dihedral_angle_4_deg 18.374 r_dihedral_angle_3_deg 14.976 r_dihedral_angle_1_deg 4.881 r_scangle_it 4.032 r_scbond_it 2.675 r_mcangle_it 1.884 r_angle_refined_deg 1.545 r_mcbond_it 1.244 r_nbtor_refined 0.31 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.224 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.101 r_symmetry_hbond_refined 0.061 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1014 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling SOLVE phasing