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Solution structure of the first SH3 domain of human Vinexin and its interaction with the peptides from Vinculin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 1-1.2mM 15N, 13C-labeled human Vinexin SH3 domain; 50mM phosphate buffer(pH 6.2); 50mM
NaCl; 1mM DTT; 1mM EDTA; 90% H2O, 10% D2O 90% H2O/10% D2O 6.2 1 atm 298 2 3D_13C-separated_NOESY 1-1.2mM 15N, 13C-labeled human Vinexin SH3 domain; 50mM phosphate buffer(pH 6.2); 50mM
NaCl; 1mM DTT; 1mM EDTA; 99.96% D2O 99.96% D2O 6.2 1 atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 2.2 Delaglio, F. 2 data analysis Sparky 3 Goddard, T.D., Kneller, D.G. 3 structure solution CNS 1.1 4 data analysis MOLMOL 2K.2 Koradi 5 refinement CNS 1.1