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Crystal structure of MabA-C60V/G139A/S144L
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UZM PDB ENTRY 1UZM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 316 22% PEG 2000, 0.35mM Mn acetate, 10% glycerol, 0.1M Tris, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 316K
Crystal Properties Matthews coefficient Solvent content 1.9 35.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.613 α = 90 b = 117.285 β = 121.9 c = 52.272 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5420
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 26.54 0.098 11.1 2.6 45213 17168 30.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 0.365 3 2.5 2563
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UZM 2.3 24 16293 868 92.54 0.18055 0.17748 0.1776 0.23805 0.2396 RANDOM 24.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.43 -0.91 0.06 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.012 r_dihedral_angle_3_deg 16.768 r_dihedral_angle_4_deg 13.649 r_dihedral_angle_1_deg 6.207 r_scangle_it 1.696 r_angle_refined_deg 1.168 r_scbond_it 1.085 r_mcangle_it 0.719 r_mcbond_it 0.431 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.012 r_dihedral_angle_3_deg 16.768 r_dihedral_angle_4_deg 13.649 r_dihedral_angle_1_deg 6.207 r_scangle_it 1.696 r_angle_refined_deg 1.168 r_scbond_it 1.085 r_mcangle_it 0.719 r_mcbond_it 0.431 r_nbtor_refined 0.296 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.178 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3065 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling