X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1943.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.284α = 90
b = 100.076β = 90
c = 102.485γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-10-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25098.8379953755422

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.245.643799537554198198.840.1660.1660.1620.253RANDOM18.057
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.5-0.671.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.685
r_scangle_it5.135
r_scbond_it3.047
r_angle_refined_deg1.963
r_mcangle_it1.824
r_mcbond_it0.98
r_angle_other_deg0.969
r_symmetry_vdw_other0.333
r_symmetry_vdw_refined0.293
r_symmetry_hbond_refined0.291
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.685
r_scangle_it5.135
r_scbond_it3.047
r_angle_refined_deg1.963
r_mcangle_it1.824
r_mcbond_it0.98
r_angle_other_deg0.969
r_symmetry_vdw_other0.333
r_symmetry_vdw_refined0.293
r_symmetry_hbond_refined0.291
r_nbd_other0.265
r_nbd_refined0.232
r_xyhbond_nbd_refined0.226
r_chiral_restr0.118
r_nbtor_other0.093
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6084
Nucleic Acid Atoms
Solvent Atoms839
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction