X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0659.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.079α = 90
b = 98.659β = 90
c = 158.997γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-04-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.250100515825158222

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.249.39515825158227861000.2280.2280.2250.274RANDOM42.951
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.98-3.87-2.11
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.387
r_scbond_it5.341
r_mcangle_it4.834
r_angle_other_deg3.529
r_mcbond_it3.08
r_angle_refined_deg1.493
r_dihedral_angle_1_deg1.259
r_symmetry_vdw_other0.35
r_symmetry_vdw_refined0.337
r_nbd_other0.317
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.387
r_scbond_it5.341
r_mcangle_it4.834
r_angle_other_deg3.529
r_mcbond_it3.08
r_angle_refined_deg1.493
r_dihedral_angle_1_deg1.259
r_symmetry_vdw_other0.35
r_symmetry_vdw_refined0.337
r_nbd_other0.317
r_symmetry_hbond_refined0.244
r_nbd_refined0.232
r_xyhbond_nbd_refined0.16
r_nbtor_other0.113
r_chiral_restr0.104
r_bond_refined_d0.007
r_gen_planes_other0.005
r_gen_planes_refined0.004
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6110
Nucleic Acid Atoms
Solvent Atoms474
Heterogen Atoms174

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction