2NPG

An unusual twin-His arrangement in the pore of ammonia channels is essential for substrate conductance


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.629825% PEG 550, 0.1M SODIUM ACETATE, 0.2M AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, pH 4.60
Crystal Properties
Matthews coefficientSolvent content
3.362.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.59α = 90
b = 109.59β = 90
c = 84.469γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2005-04-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.99778SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125099.90.09715.3338954-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.11000.8422.71

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1XQF2153889836917195199.920.18040.18040.178710.21204RANDOM43.42
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.610.81.61-2.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.653
r_dihedral_angle_4_deg19.483
r_dihedral_angle_3_deg13.456
r_scangle_it4.694
r_scbond_it3.543
r_mcangle_it2.323
r_dihedral_angle_1_deg1.902
r_mcbond_it1.48
r_angle_refined_deg1.464
r_xyhbond_nbd_refined0.707
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.653
r_dihedral_angle_4_deg19.483
r_dihedral_angle_3_deg13.456
r_scangle_it4.694
r_scbond_it3.543
r_mcangle_it2.323
r_dihedral_angle_1_deg1.902
r_mcbond_it1.48
r_angle_refined_deg1.464
r_xyhbond_nbd_refined0.707
r_nbtor_refined0.319
r_nbd_refined0.215
r_symmetry_vdw_refined0.185
r_symmetry_hbond_refined0.136
r_chiral_restr0.113
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2665
Nucleic Acid Atoms
Solvent Atoms83
Heterogen Atoms25

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
MAR345data collection
XDSdata reduction
XSCALEdata scaling