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An NMR/SAXS structure of the PKI domain of the honeybee dicistrovirus, Israeli acute paralysis virus (IAPV) IRES
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N TROSY-HMQC 0.7 mM [U-13C; U-15N]-Gua RNA (70-MER) 90% H2O/10% D2O 0.225 6.3 ambient 283
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software torsion angle dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 chemical shift assignment Sparky Goddard 3 structure solution MC-SIM 4.2.2 Parisien, Major 4 peak picking NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore