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Solution Structure of the RNA-Binding domain of non-structural protein 1 from the 1918 H1N1 influenza virus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 2 3D HNCACB 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 3 3D HNCO 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 4 3D CBCA(CO)NH 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 5 3D HNHA 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 6 3D HCCH-COSY 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 7 3D 1H-15N NOESY 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 8 3D 1H-13C NOESY 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298 9 3D 1H-13C NOESY aliphatic 1.0 mM [U-13C; U-15N] Influenza NS1 RNA Binding Domain, 300 mM Ammonium Acetate, 2.2 mM EDTA, 0.1 % sodium azide 95% H2O/5% D2O 300 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 850 2 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 16 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 chemical shift assignment NMRView Johnson, One Moon Scientific 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore