2N5T

Ensemble solution structure of the phosphoenolpyruvate-Enzyme I complex from the bacterial phosphotransferase system


SOLUTION NMR - SOLUTION SCATTERING
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1ARTSY0.4 mM [U-13C; U-15N; U-2H] EIA, 20 mM TRIS, 1 mM EDTA, 100 mM sodium chloride, 2 mM DTT90% H2O/10% D2O0.17.4ambient310
22D 1H-15N HSQC0.4 mM [U-13C; U-15N; U-2H] EIA, 20 mM TRIS, 1 mM EDTA, 100 mM sodium chloride, 2 mM DTT90% H2O/10% D2O0.17.4ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingThe deposited structures represent two-membered ensembles with varying weights which must be considered together to properly reproduce the RDC and SAXS data. The first members of 10 ensembles are reported in models 1-10 which were allowed rigid-body motion of subunits, arbitrary motion of linker regions and torsion degrees of freedom for sidechains. The second member of each ensemble is represented in model 11, which was fixed in the calculations. The ten pairs of weights for the ten ensemble members are Ensemble 1: MODEL 1, weight: 0.503 MODEL 11, weight: 0.497 Ensemble 2: MODEL 2, weight: 0.518 MODEL 11, weight: 0.482 Ensemble 3: MODEL 3, weight: 0.526 MODEL 11, weight: 0.474 Ensemble 4: MODEL 4, weight: 0.520 MODEL 11, weight: 0.480 Ensemble 5: MODEL 5, weight: 0.508 MODEL 11, weight: 0.492 Ensemble 6: MODEL 6, weight: 0.531 MODEL 11, weight: 0.469 Ensemble 7: MODEL 7, weight: 0.498 MODEL 11, weight: 0.501 Ensemble 8: MODEL 8, weight: 0.524 MODEL 11, weight: 0.476 Ensemble 9: MODEL 9, weight: 0.514 MODEL 11, weight: 0.486 Ensemble 10: MODEL 10, weight: 0.526 MODEL 11, weight: 0.474Xplor-NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number11
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentSparkyGoddard
2refinementXplor-NIHSchwieters, Kuszewski, Tjandra and Clore
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4collectionTopSpinBruker Biospin