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Solution structure of the link module of human tsg-6 in presence of a chondroitin 4-sulfate hexasaccharide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298 2 3D CBCA(CO)NH 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298 3 3D HNCO 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298 4 3D HNCACB 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298 5 3D HCCH-TOCSY 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298 6 3D 1H-15N NOESY 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298 7 3D 1H-13C NOESY 50 mM MES, 0.02 % NaN3, 0.5 mM [U-100% 13C; U-100% 15N] Link-TSG, 0.6 mM CHONDROITIN 4-SULFATE HEXASACCHARIDE 90% H2O/10% D2O 6 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 800 3 Varian INOVA 900
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH 2.8 Schwieters, Kuszewski, Tjandra and Clore 2 structure solution X-PLOR NIH 2.8 Schwieters, Kuszewski, Tjandra and Clore 3 refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich 4 structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich 5 peak picking Sparky Goddard 6 chemical shift assignment Sparky Goddard 7 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 8 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax