2N2C
NMR Structure of TDP-43 prion-like hydrophobic helix in DPC
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 300 uM [U-100% 15N] entity-1, 60 mM DPC-2 | 90% H2O/10% D2O | 1 | 4 | ambient | 313 | |
| 2 | 3D 1H-15N TOCSY | 300 uM [U-100% 15N] entity-1, 60 mM DPC-2 | 90% H2O/10% D2O | 1 | 4 | ambient | 313 | |
| 3 | 3D H(CCO)NH | 300 uM [U-100% 15N] entity-1, 60 mM DPC-2 | 90% H2O/10% D2O | 1 | 4 | ambient | 313 | |
| 4 | 3D HCCH-TOCSY | 300 uM [U-100% 15N] entity-1, 60 mM DPC-2 | 90% H2O/10% D2O | 1 | 4 | ambient | 313 | |
| 5 | 3D HNCACB | 300 uM [U-100% 15N] entity-1, 60 mM DPC-2 | 90% H2O/10% D2O | 1 | 4 | ambient | 313 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 6 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 2 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
