2MZ9
Solution structure of oxidized triheme cytochrome PpcA from Geobacter sulfurreducens
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 2 mM protein_1, 92 % H2O, 8 % D2O, 45 mM sodium phosphate, 0.04 % sodium azide | 93% H2O/7% D2O | 100 | 5.5 | ambient | 298 | |
2 | 2D 1H-1H NOESY | 2 mM protein_1, 92 % H2O, 8 % D2O, 45 mM sodium phosphate, 0.04 % sodium azide | 93% H2O/7% D2O | 100 | 5.5 | ambient | 298 | |
3 | 2D 1H-15N HSQC | 2 mM [U-100% 15N] protein_1, 92 % H2O, 8 % D2O, 45 mM sodium phosphate, 0.04 % sodium azide | 93% H2O/7% D2O | 100 | 5.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard | |
5 | structure solution | PARADYANA | Guntert, Braun and Wuthrich | |
6 | refinement | PARADYANA |