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Solution structure of NDP52 ubiquitin-binding zinc finger
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] entity_1-1, 1 mM [U-100% 15N] entity_1-2 90% H2O/10% D2O 0.1 6.5 ambient atm 298 2 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] entity_1-1, 1 mM [U-100% 15N] entity_1-2 90% H2O/10% D2O 0.1 6.5 ambient atm 298 3 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] entity_1-1, 1 mM [U-100% 15N] entity_1-2 90% H2O/10% D2O 0.1 6.5 ambient atm 298 4 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] entity_1-1, 1 mM [U-100% 15N] entity_1-2 90% H2O/10% D2O 0.1 6.5 ambient atm 298 5 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] entity_1-3 100% D2O 0.1 6.5 ambient atm 298 6 3D 1H-13C NOESY aliphatic 1 mM [U-100% 13C; U-100% 15N] entity_1-3 100% D2O 0.1 6.5 ambient atm 298 7 2D 1H-1H NOESY 1.2 mM entity_1-4 100% D2O 0.1 6.5 ambient atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent INOVA 800
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 chemical shift assignment PIPP Garrett 3 data analysis PIPP Garrett 4 data analysis Sparky Goddard 5 chemical shift assignment Sparky Goddard 6 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 7 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read