NMR structure of the protein YP_193882.1 from Lactobacillus acidophilus NCFM in presence of FMN
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | APSY 4D-HACANH | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| 2 | APSY 5D-HACACONH | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| 3 | APSY 5D-CBCACONH | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| 4 | 2D 1H-15N HSQC | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| 5 | 3D 1H-15N NOESY | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| 6 | 3D 1H-13C NOESY aliphatic | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| 7 | 3D 1H-13C NOESY aromatic | 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| 2 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 80 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CYANA | 3.0 | Herrmann, Guntert and Wuthrich |
| 2 | peak picking | CYANA | 3.0 | Herrmann, Guntert and Wuthrich |
| 3 | chemical shift assignment | CYANA | 3.0 | Herrmann, Guntert and Wuthrich |
| 4 | structure solution | CYANA | 3.0 | Herrmann, Guntert and Wuthrich |
| 5 | collection | TopSpin | 3.1 | Bruker Biospin |
| 6 | processing | TopSpin | 3.1 | Bruker Biospin |
| 7 | processing | PROSA | Guntert | |
| 8 | geometry optimization | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich | |
| 9 | chemical shift assignment | CARA | Keller and Wuthrich | |
